X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherRab11 in complex with Rab11-FIP in the trigonal space group

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5298Ammonium phosphate buffer, between 0.1 and 0.5 M concentration, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7354.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.364α = 90
b = 91.149β = 90
c = 113.099γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2005-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.97865ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.445099.720.1028.813241312406411
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.442.5398.50.421102565

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTRab11 in complex with Rab11-FIP in the trigonal space group2.44502540324064129099.720.228860.228860.226280.27888RANDOM39.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.450.582.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.282
r_dihedral_angle_4_deg23.053
r_dihedral_angle_3_deg19.594
r_dihedral_angle_1_deg9.512
r_scangle_it3.732
r_scbond_it2.488
r_angle_refined_deg1.974
r_mcangle_it1.857
r_mcbond_it1.154
r_symmetry_hbond_refined0.313
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.282
r_dihedral_angle_4_deg23.053
r_dihedral_angle_3_deg19.594
r_dihedral_angle_1_deg9.512
r_scangle_it3.732
r_scbond_it2.488
r_angle_refined_deg1.974
r_mcangle_it1.857
r_mcbond_it1.154
r_symmetry_hbond_refined0.313
r_nbtor_refined0.304
r_nbd_refined0.24
r_xyhbond_nbd_refined0.191
r_symmetry_vdw_refined0.145
r_chiral_restr0.134
r_metal_ion_refined0.049
r_bond_refined_d0.02
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3258
Nucleic Acid Atoms
Solvent Atoms78
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
AMoREphasing