2GXU

HERA N-terminal domain in complex with orthophosphate, crystal form 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729514% PEG6000, 0.3M CaCl2, 0.1M Tris/HCl pH7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.141.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.554α = 90
b = 53.655β = 95.29
c = 44.671γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray140IMAGE PLATEMAR scanner 345 mm platemirrors2006-04-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5419

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.665096.10.07125.17211172111721
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.661.7264.40.3822.32.81405

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6730.8220042107497.170.169140.166820.20971RANDOM21.508
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.110.5-0.350.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.659
r_dihedral_angle_4_deg15.78
r_dihedral_angle_3_deg13.564
r_dihedral_angle_1_deg5.222
r_scangle_it3.463
r_scbond_it2.162
r_angle_refined_deg1.546
r_mcangle_it1.49
r_angle_other_deg0.963
r_mcbond_it0.938
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.659
r_dihedral_angle_4_deg15.78
r_dihedral_angle_3_deg13.564
r_dihedral_angle_1_deg5.222
r_scangle_it3.463
r_scbond_it2.162
r_angle_refined_deg1.546
r_mcangle_it1.49
r_angle_other_deg0.963
r_mcbond_it0.938
r_symmetry_vdw_other0.262
r_mcbond_other0.239
r_nbd_refined0.216
r_nbd_other0.202
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.176
r_symmetry_vdw_refined0.175
r_symmetry_hbond_refined0.127
r_chiral_restr0.093
r_nbtor_other0.084
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1746
Nucleic Acid Atoms
Solvent Atoms229
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
HKL-2000data scaling
COMOphasing