2GV3
Translocation of a tRNA with an extended anticodon through the ribosome
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM RNA, 10mM sodium phosphate pH 7.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 10mM Na phosphate | 7.5 | ambient | 288 | |
2 | 2D NOESY | 1mM RNA, 10mM sodium phosphate pH 7.5; 100% D2O | 100% D2O | 10mM Na phosphate | 7.5 | ambient | 293 | |
3 | 2D NOESY | 1mM RNA, 10mM sodium phosphate pH 7.5; 100% D2O | 100% D2O | 10mM Na phosphate | 7.5 | ambient | 303 | |
4 | 2D TOCSY | 1mM RNA, 10mM sodium phosphate pH 7.5; 100% D2O | 100% D2O | 10mM Na phosphate | 7.5 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DRX | 600 |
3 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | |
2 | processing | XwinNMR | 3.1 | |
3 | processing | Gifa | 4.0 | |
4 | data analysis | Gifa | 4.0 | |
5 | refinement | CNS | 1.1 |