Solution NMR Structure of Protein YNR034W-A from Saccharomyces cerevisiae. Northeast Structural Genomics Consortium Target YT727; Ontario Center for Structural Proteomics Target yst6499.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 1mM yst6499, U-15N,13C; 250 mM NaCl, 10 mM Tris; 1 mM Benzamidine, 1 x inhibitor cocktail, 0.01% NaN3; 95% H2O, 5% D2O | 95% H2O/5% D2O | 250 mM NaCl, 10 mM Tris | 7.1 | ambient | 298 | |
| 2 | 3D_13C-separated_NOESY | 1mM yst6499, U-15N,13C; 250 mM NaCl, 10 mM Tris; 1 mM Benzamidine, 1 x inhibitor cocktail, 0.01% NaN3; 95% H2O, 5% D2O | 95% H2O/5% D2O | 250 mM NaCl, 10 mM Tris | 7.1 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics and molecular dynamics | 2890 NOE-derived distance restraints and 110 torsion angle restraints | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.3 | Delaglio, F. |
| 2 | data analysis | Sparky | 3.95 | Goddard, T.D. and Kneller, D.G. |
| 3 | structure solution | CYANA | 2.1 | Gunter, P. |
| 4 | refinement | CNS | 1.0 | Brunger, A.T. et al |














