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Mycobacterium tuberculosis ThyX-NADP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AF6 PDB ENTRY 2AF6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 100mM sodium acetate, 200mM pottasium iodide, 2mM DTT and 13-15% PEG3350, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.17 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.007 α = 90 b = 78.09 β = 95.67 c = 88.514 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97 0.072 10 2.4 64080 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.7 0.369 3.3 6498
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AF6 2.1 35.2 53189 2809 96.71 0.21404 0.21185 0.2147 0.25464 0.21 RANDOM 25.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.388 r_dihedral_angle_4_deg 15.288 r_dihedral_angle_3_deg 13.737 r_dihedral_angle_1_deg 5.883 r_scangle_it 3.323 r_scbond_it 2.056 r_angle_refined_deg 1.399 r_mcangle_it 1.318 r_mcbond_it 0.706 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.388 r_dihedral_angle_4_deg 15.288 r_dihedral_angle_3_deg 13.737 r_dihedral_angle_1_deg 5.883 r_scangle_it 3.323 r_scbond_it 2.056 r_angle_refined_deg 1.399 r_mcangle_it 1.318 r_mcbond_it 0.706 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.178 r_metal_ion_refined 0.146 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6983 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 263
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling AMoRE phasing