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Estrogen Related Receptor-gamma ligand binding domain complexed with 4-hydroxy-tamoxifen and a SMRT peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GP7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 7% PEG3350
0.2M Lithium Acetate, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.15 60.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.22 α = 90 b = 117.17 β = 102.36 c = 90.47 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 50 90.2 0.093 3.4 48079 43368 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.95 38.21 39.9 0.298 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GP7 2.85 19.91 47597 43251 1359 90.87 0.221 0.221 0.219 0.2251 0.279 0.2799 RANDOM 13.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.93 -0.55 0.14 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.385 r_dihedral_angle_3_deg 17.053 r_dihedral_angle_4_deg 14.966 r_dihedral_angle_1_deg 5.155 r_scangle_it 1.297 r_angle_refined_deg 1.164 r_angle_other_deg 0.863 r_scbond_it 0.83 r_mcangle_it 0.536 r_mcbond_it 0.335
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.385 r_dihedral_angle_3_deg 17.053 r_dihedral_angle_4_deg 14.966 r_dihedral_angle_1_deg 5.155 r_scangle_it 1.297 r_angle_refined_deg 1.164 r_angle_other_deg 0.863 r_scbond_it 0.83 r_mcangle_it 0.536 r_mcbond_it 0.335 r_symmetry_vdw_other 0.252 r_nbd_refined 0.231 r_nbtor_refined 0.183 r_nbd_other 0.18 r_symmetry_vdw_refined 0.17 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.086 r_mcbond_other 0.068 r_chiral_restr 0.056 r_xyhbond_nbd_other 0.027 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10545 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 174
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection PHENIX phasing