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Estrogen Related Receptor-gamma ligand binding domain complexed with a synthetic peptide from RIP140
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 295 14% PEG 3350
0.2M sodium formate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.49 50.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.315 α = 90 b = 64.315 β = 90 c = 139.134 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.7 0.057 22078 22078 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 99.4 99.4 0.379
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 47.14 22144 22011 713 99.75 0.182 0.182 0.181 0.1823 0.231 0.2354 RANDOM 29.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.47 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_dihedral_angle_4_deg 15.916 r_dihedral_angle_3_deg 13.633 r_dihedral_angle_1_deg 4.42 r_scangle_it 3.292 r_scbond_it 2.14 r_mcangle_it 1.331 r_angle_refined_deg 1.134 r_mcbond_it 0.926 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_dihedral_angle_4_deg 15.916 r_dihedral_angle_3_deg 13.633 r_dihedral_angle_1_deg 4.42 r_scangle_it 3.292 r_scbond_it 2.14 r_mcangle_it 1.331 r_angle_refined_deg 1.134 r_mcbond_it 0.926 r_nbtor_refined 0.297 r_symmetry_hbond_refined 0.219 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1934 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection