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CRYSTAL STRUCTURE OF A HYDROLASE FROM HALOACID DEHALOGENASE-LIKE FAMILY (SP_2064) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 2.10 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 5.5 277 0.2M MgCl2, 40.0% PEG-400, 0.1M Citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.12 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155 α = 90 b = 155 β = 90 c = 88.44 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2005-12-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979224, 0.918370, 0.978940 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.48 99.3 0.085 6.83 3.76 70459 35.139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 96.2 0.521 1.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.29 70427 3555 99.7 0.173 0.171 0.1781 0.209 0.2142 RANDOM 25.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.13 -0.27 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.984 r_dihedral_angle_3_deg 14.564 r_dihedral_angle_4_deg 13.835 r_scangle_it 6.427 r_dihedral_angle_1_deg 6.096 r_scbond_it 4.559 r_mcangle_it 2.665 r_mcbond_it 1.905 r_angle_refined_deg 1.439 r_angle_other_deg 0.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.984 r_dihedral_angle_3_deg 14.564 r_dihedral_angle_4_deg 13.835 r_scangle_it 6.427 r_dihedral_angle_1_deg 6.096 r_scbond_it 4.559 r_mcangle_it 2.665 r_mcbond_it 1.905 r_angle_refined_deg 1.439 r_angle_other_deg 0.958 r_mcbond_other 0.685 r_symmetry_vdw_other 0.257 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.211 r_nbd_other 0.184 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.162 r_symmetry_hbond_refined 0.112 r_nbtor_other 0.089 r_chiral_restr 0.087 r_metal_ion_refined 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6478 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHARP phasing