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An activated, truncated gamma-delta resolvase tetramer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 Protein in 200 mM NaCl, 3.75 mM DTT, 40 mM Tris-HCl, 0.05 M Li2SO4, 7.5% PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.08 40.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.331 α = 90 b = 98.476 β = 90 c = 100.408 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-10-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.97180, 0.97930, 0.97950 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.8 0.089 7.7 3.8 59517 59517 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 100 0.738 1.9 3.8 5922
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 47.14 31507 31507 3122 99.97 0.219 0.219 0.215 0.218 0.255 RANDOM 42.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.93 -0.56 2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_dihedral_angle_4_deg 17.675 r_dihedral_angle_3_deg 15.352 r_dihedral_angle_1_deg 4.259 r_scangle_it 4.174 r_scbond_it 2.653 r_mcangle_it 1.537 r_mcbond_it 1.098 r_angle_refined_deg 0.947 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_dihedral_angle_4_deg 17.675 r_dihedral_angle_3_deg 15.352 r_dihedral_angle_1_deg 4.259 r_scangle_it 4.174 r_scbond_it 2.653 r_mcangle_it 1.537 r_mcbond_it 1.098 r_angle_refined_deg 0.947 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.185 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3670 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection SOLVE phasing