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Protein of Unknown Function NMB0488 from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1 M Hepes buffer, 25% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.22 44.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.102 α = 90 b = 79.877 β = 90 c = 44.624 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2006-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97923 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 30.4 92.6 0.075 36 12.3 36110 36110 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 41.7 0.51 2.07 5.6 800
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.35 30.4 36032 36032 2108 92.87 0.1536 0.1536 0.1541 0.1548 0.2065 0.1677 RANDOM 19.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.29 2.12 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.703 r_dihedral_angle_4_deg 17.299 r_dihedral_angle_3_deg 13.918 r_sphericity_free 6.429 r_dihedral_angle_1_deg 5.575 r_sphericity_bonded 5.086 r_scangle_it 4.08 r_scbond_it 3.174 r_mcangle_it 2.137 r_rigid_bond_restr 2.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.703 r_dihedral_angle_4_deg 17.299 r_dihedral_angle_3_deg 13.918 r_sphericity_free 6.429 r_dihedral_angle_1_deg 5.575 r_sphericity_bonded 5.086 r_scangle_it 4.08 r_scbond_it 3.174 r_mcangle_it 2.137 r_rigid_bond_restr 2.078 r_angle_refined_deg 1.509 r_mcbond_it 1.469 r_nbtor_refined 0.318 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.226 r_symmetry_hbond_refined 0.221 r_symmetry_vdw_refined 0.204 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1329 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection SCALEPACK data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing