☰ Navigation Tabs
Crystal structure of the human receptor phosphatase PTPRO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AHS PDB ENTRY 2AHS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 Isopropanol, PEG4K, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.77 55.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.06 α = 90 b = 131.06 β = 90 c = 77.53 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.95 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 42.91 99.9 41322 41322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.25 99.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AHS 2.15 42.91 39238 39238 2076 99.87 0.18192 0.18192 0.17924 0.1812 0.23366 0.2334 RANDOM 29.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.05 -0.09 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.842 r_dihedral_angle_4_deg 17.823 r_dihedral_angle_3_deg 13.762 r_scangle_it 11.126 r_scbond_it 9.675 r_mcangle_it 7.292 r_dihedral_angle_1_deg 6.861 r_mcbond_it 6.374 r_mcbond_other 2.536 r_angle_refined_deg 1.587
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.842 r_dihedral_angle_4_deg 17.823 r_dihedral_angle_3_deg 13.762 r_scangle_it 11.126 r_scbond_it 9.675 r_mcangle_it 7.292 r_dihedral_angle_1_deg 6.861 r_mcbond_it 6.374 r_mcbond_other 2.536 r_angle_refined_deg 1.587 r_angle_other_deg 0.995 r_symmetry_vdw_other 0.219 r_nbd_refined 0.216 r_nbd_other 0.195 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.162 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.099 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4590 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHASER phasing