2GJI
NMR solution structure of VP9 from White Spot Syndrome Virus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 | |
3 | HCCH-TOCSY | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 | |
4 | HNCACB | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 | |
5 | CBCA(CO)NH | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 | |
6 | HSQC | 20mM phosphate buffer, 3mM VP9; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM phosphate buffer | 6.72 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2004 | Delaglio, F. |
2 | structure solution | CYANA | 2.1 | Guntert, P. |
3 | data analysis | NMRView | 5.2.2 | Johnson, B.A. |
4 | refinement | CYANA | 2.1 | Guntert, P. |