X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP730020% PEG3350, 0.2 M CaCl2, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.550.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.305α = 90
b = 58.577β = 90
c = 119.753γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-03-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9441.8988.62208822088
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.942.0241

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MJB1.9441.892090620906112588.610.210350.210350.207470.26198RANDOM32.936
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.81.85-0.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.436
r_dihedral_angle_4_deg20.579
r_dihedral_angle_3_deg16.007
r_dihedral_angle_1_deg9.603
r_scangle_it4.265
r_scbond_it2.948
r_angle_refined_deg2.122
r_mcangle_it1.898
r_mcbond_it1.249
r_nbtor_refined0.318
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.436
r_dihedral_angle_4_deg20.579
r_dihedral_angle_3_deg16.007
r_dihedral_angle_1_deg9.603
r_scangle_it4.265
r_scbond_it2.948
r_angle_refined_deg2.122
r_mcangle_it1.898
r_mcbond_it1.249
r_nbtor_refined0.318
r_nbd_refined0.241
r_chiral_restr0.21
r_symmetry_vdw_refined0.185
r_xyhbond_nbd_refined0.181
r_symmetry_hbond_refined0.167
r_bond_refined_d0.021
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2106
Nucleic Acid Atoms
Solvent Atoms185
Heterogen Atoms53

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
HKL-2000data scaling
MOLREPphasing