X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BRJPDB ENTRY 2BRJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP529114% (w/v) PEG 8000, 6%(v/v) tert. Butanol, 100mM MES, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.4248.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.9α = 90
b = 104.2β = 95.1
c = 86.7γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 225 mm2005-05-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.950SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85097.70.07411.274.310780610780632.115
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.82.193.882.60.224.83.438302

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BRJ1.850107806107806539397.70.2090.2070.248RANDOM23.769
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.83-0.380.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.329
r_dihedral_angle_3_deg14.119
r_dihedral_angle_4_deg13.994
r_dihedral_angle_1_deg7.036
r_scangle_it3.837
r_scbond_it2.607
r_angle_refined_deg1.758
r_mcangle_it1.543
r_mcbond_it0.943
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.329
r_dihedral_angle_3_deg14.119
r_dihedral_angle_4_deg13.994
r_dihedral_angle_1_deg7.036
r_scangle_it3.837
r_scbond_it2.607
r_angle_refined_deg1.758
r_mcangle_it1.543
r_mcbond_it0.943
r_nbtor_refined0.299
r_symmetry_vdw_refined0.233
r_symmetry_hbond_refined0.21
r_nbd_refined0.203
r_xyhbond_nbd_refined0.179
r_chiral_restr0.125
r_bond_refined_d0.022
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8130
Nucleic Acid Atoms
Solvent Atoms660
Heterogen Atoms32

Software

Software
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction