X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.52900.2M Magnesium Chloride Hexahydrate, 0.1M pH5.5 Bis-Tris, 25% PEG 2000, VAPOR DIFFUSION, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.8556.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.04α = 90
b = 106.23β = 90
c = 186.04γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2006-02-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.143.1996.90.08219.058458884588-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.210093.70.4194.5710923

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.143.19845898458842301000.2140.2140.2120.249RANDOM36.954
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.49-1.06-0.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.389
r_dihedral_angle_4_deg19.706
r_dihedral_angle_3_deg14.345
r_dihedral_angle_1_deg5.827
r_scangle_it2.638
r_scbond_it1.837
r_angle_refined_deg1.309
r_mcangle_it1.241
r_mcbond_it1.109
r_angle_other_deg0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.389
r_dihedral_angle_4_deg19.706
r_dihedral_angle_3_deg14.345
r_dihedral_angle_1_deg5.827
r_scangle_it2.638
r_scbond_it1.837
r_angle_refined_deg1.309
r_mcangle_it1.241
r_mcbond_it1.109
r_angle_other_deg0.79
r_symmetry_vdw_other0.253
r_nbd_refined0.211
r_nbtor_refined0.18
r_nbd_other0.168
r_xyhbond_nbd_refined0.159
r_mcbond_other0.153
r_symmetry_vdw_refined0.141
r_nbtor_other0.083
r_symmetry_hbond_refined0.077
r_chiral_restr0.073
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8676
Nucleic Acid Atoms
Solvent Atoms431
Heterogen Atoms

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
PHASERphasing