2GH0

Growth factor/receptor complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82930.1 M Imidazole buffer, 0.1 M MgCl2, and 20% (v/v) ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5651.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.678α = 90
b = 41.46β = 103.56
c = 119.863γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.11.0ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95098.954357
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9798.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.92505172351067274098.730.24120.221640.219460.26294RANDOM37.509
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.241.250.470.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.05
r_dihedral_angle_4_deg18.174
r_dihedral_angle_3_deg15.573
r_dihedral_angle_1_deg5.834
r_scangle_it5.082
r_scbond_it3.51
r_mcangle_it1.889
r_angle_refined_deg1.824
r_mcbond_it1.28
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.05
r_dihedral_angle_4_deg18.174
r_dihedral_angle_3_deg15.573
r_dihedral_angle_1_deg5.834
r_scangle_it5.082
r_scbond_it3.51
r_mcangle_it1.889
r_angle_refined_deg1.824
r_mcbond_it1.28
r_nbtor_refined0.306
r_symmetry_vdw_refined0.27
r_nbd_refined0.218
r_symmetry_hbond_refined0.167
r_xyhbond_nbd_refined0.16
r_chiral_restr0.128
r_bond_refined_d0.021
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4570
Nucleic Acid Atoms
Solvent Atoms236
Heterogen Atoms75

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing