Experiment: 2GGQ

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	293	13% PEG 3350, 0.1M KI, 50mM dTTP, 20mM TRIS-HCL, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
3.11	60.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 122.75	α = 90
b = 122.75	β = 90
c = 95.518	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315		2005-11-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL41XU	1.000	SPring-8	BL41XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	50	98.5			36018	35513

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.07	88.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2GG0	2	20	35513	33712	1771	98.51	0.2485	0.19354	0.19058	0.25162	RANDOM	32.916

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.33	-0.67		-1.33		2

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.549
r_dihedral_angle_4_deg	22.914
r_dihedral_angle_3_deg	17.704
r_dihedral_angle_1_deg	14.293
r_scangle_it	4.207
r_scbond_it	2.548
r_mcangle_it	1.751
r_angle_refined_deg	1.717
r_mcbond_it	0.987
r_nbtor_refined	0.313

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.549
r_dihedral_angle_4_deg	22.914
r_dihedral_angle_3_deg	17.704
r_dihedral_angle_1_deg	14.293
r_scangle_it	4.207
r_scbond_it	2.548
r_mcangle_it	1.751
r_angle_refined_deg	1.717
r_mcbond_it	0.987
r_nbtor_refined	0.313
r_symmetry_hbond_refined	0.247
r_nbd_refined	0.228
r_symmetry_vdw_refined	0.208
r_xyhbond_nbd_refined	0.159
r_chiral_restr	0.13
r_bond_refined_d	0.017
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3141
Nucleic Acid Atoms
Solvent Atoms	197
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
ADSC	data collection
SCALEPACK	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.