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NMR Structure of the nonstructural protein 1 (nsp1) from the SARS coronavirus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 2 mM nsp1-6; 25 mM NaPhosphate pH 7.0, 250 mM NaCl, 10% D2O 25 mM NaPhosphate pH 7.0, 250 mM NaCl, 10% D2O 25 mM sodium phosphate and 250 mM NaCl 7.0 1 atm 298 2 3D_15N-separated_NOESY 2 mM nsp1-6; 25 mM NaPhosphate pH 7.0, 250 mM NaCl, 10% D2O 25 mM NaPhosphate pH 7.0, 250 mM NaCl, 10% D2O 25 mM sodium phosphate and 250 mM NaCl 7.0 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software ATNOS/CANDID/CYANA Molecular dynamics using cyana 1.0.3.
Energy minimization in a water shell using OPALp with AMBER force field. TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 120 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin 1.3 Bruker 2 data analysis ATNOS/CANDID standalone Herrmann 3 structure solution CYANA 1.0.3 Guntert 4 refinement OPALp Luginbuhl