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Crystal structure of the human RhoC-GDP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291.15 20% PEG 3350, 0.1M Bis Tris, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
Crystal Properties Matthews coefficient Solvent content 2.25 45.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.214 α = 90 b = 56.617 β = 90 c = 81.834 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 46.575 98.3 0.05 0.05 9.9 3.4 18087 17803 6 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 98.3 91.2 0.148 0.148 4.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z2C 1.85 46.57 6 18153 17765 905 97.86 0.178 0.17812 0.176 0.1751 0.225 0.2243 RANDOM 18.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.15 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.253 r_dihedral_angle_4_deg 20.288 r_dihedral_angle_3_deg 14.999 r_dihedral_angle_1_deg 10.009 r_scangle_it 2.948 r_scbond_it 1.967 r_angle_refined_deg 1.604 r_mcangle_it 1.266 r_mcbond_it 0.792 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.253 r_dihedral_angle_4_deg 20.288 r_dihedral_angle_3_deg 14.999 r_dihedral_angle_1_deg 10.009 r_scangle_it 2.948 r_scbond_it 1.967 r_angle_refined_deg 1.604 r_mcangle_it 1.266 r_mcbond_it 0.792 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.166 r_chiral_restr 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1409 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 49
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data reduction CCP4 data scaling