2G51

anomalous substructure of trypsin (p1)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9537.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.9α = 102.46
b = 36.8β = 104.97
c = 39.63γ = 102.16
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X122.00EMBL/DESY, HamburgX12

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.843012840

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.84301257027088.010.160740.159610.21629RANDOM20.349
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.690.60.01-0.410.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.609
r_dihedral_angle_4_deg14.378
r_dihedral_angle_3_deg11.668
r_dihedral_angle_1_deg6.83
r_scangle_it4.045
r_scbond_it3.241
r_angle_refined_deg1.805
r_angle_other_deg1.691
r_mcangle_it1.688
r_mcbond_it1.102
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.609
r_dihedral_angle_4_deg14.378
r_dihedral_angle_3_deg11.668
r_dihedral_angle_1_deg6.83
r_scangle_it4.045
r_scbond_it3.241
r_angle_refined_deg1.805
r_angle_other_deg1.691
r_mcangle_it1.688
r_mcbond_it1.102
r_mcbond_other0.276
r_symmetry_vdw_refined0.216
r_symmetry_vdw_other0.206
r_nbd_refined0.186
r_nbd_other0.186
r_symmetry_hbond_refined0.177
r_nbtor_refined0.166
r_xyhbond_nbd_refined0.138
r_chiral_restr0.112
r_nbtor_other0.089
r_bond_refined_d0.022
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1551
Nucleic Acid Atoms
Solvent Atoms139
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
FFTphasing