2G4X

Anomalous substructure od ribonuclease A (P3221)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7855.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.32α = 90
b = 64.32β = 90
c = 63.74γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X122.0EMBL/DESY, HamburgX12

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.953011449

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.95301120824199.830.176180.175110.22392RANDOM23.62
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.02-0.030.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.738
r_dihedral_angle_4_deg22.657
r_dihedral_angle_3_deg16.527
r_scangle_it7.674
r_dihedral_angle_1_deg7.4
r_scbond_it5.568
r_mcangle_it2.318
r_angle_refined_deg2.125
r_mcbond_it1.735
r_angle_other_deg1.053
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.738
r_dihedral_angle_4_deg22.657
r_dihedral_angle_3_deg16.527
r_scangle_it7.674
r_dihedral_angle_1_deg7.4
r_scbond_it5.568
r_mcangle_it2.318
r_angle_refined_deg2.125
r_mcbond_it1.735
r_angle_other_deg1.053
r_symmetry_vdw_refined0.63
r_mcbond_other0.332
r_symmetry_vdw_other0.253
r_nbd_other0.206
r_nbd_refined0.205
r_nbtor_refined0.172
r_xyhbond_nbd_refined0.143
r_chiral_restr0.117
r_symmetry_hbond_refined0.117
r_nbtor_other0.096
r_bond_refined_d0.027
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms951
Nucleic Acid Atoms
Solvent Atoms88
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
FFTphasing