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Anomalous substructure of apoferritin
Crystallization Crystal Properties Matthews coefficient Solvent content 3.17 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.16 α = 90 b = 182.16 β = 90 c = 182.16 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 2.00 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 18033
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 30 17652 381 99.81 0.19594 0.19549 0.2081 0.21772 RANDOM 25.213
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.705 r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 12.691 r_scangle_it 7.19 r_dihedral_angle_1_deg 6.295 r_scbond_it 5.163 r_mcangle_it 1.946 r_mcbond_it 1.665 r_angle_refined_deg 1.511 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.705 r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 12.691 r_scangle_it 7.19 r_dihedral_angle_1_deg 6.295 r_scbond_it 5.163 r_mcangle_it 1.946 r_mcbond_it 1.665 r_angle_refined_deg 1.511 r_angle_other_deg 0.901 r_metal_ion_refined 0.451 r_symmetry_vdw_refined 0.337 r_mcbond_other 0.267 r_nbd_refined 0.265 r_symmetry_hbond_refined 0.22 r_symmetry_vdw_other 0.203 r_nbd_other 0.192 r_symmetry_metal_ion_refined 0.191 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.096 r_nbtor_other 0.083 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1363 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling FFT phasing