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Cyanide Binding and Heme Cavity Conformational Transitions in Drosophila melanogaster Hexa-coordinate Hemoglobin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 10 277 34% PEG 4K, 0.2M magnesium chloride, 0.05M CAPS, pH 10, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.314 α = 90 b = 33.712 β = 94.43 c = 56.059 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.98400 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 35.53 100 32118 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 15 30438 1622 99.93 0.15568 0.15394 0.1605 0.18776 0.1941 RANDOM 6.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.1 0.01 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.973 r_dihedral_angle_4_deg 20.806 r_dihedral_angle_3_deg 10.705 r_sphericity_free 6.617 r_dihedral_angle_1_deg 4.569 r_scangle_it 3.763 r_sphericity_bonded 2.916 r_scbond_it 2.848 r_mcangle_it 1.792 r_rigid_bond_restr 1.694
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.973 r_dihedral_angle_4_deg 20.806 r_dihedral_angle_3_deg 10.705 r_sphericity_free 6.617 r_dihedral_angle_1_deg 4.569 r_scangle_it 3.763 r_sphericity_bonded 2.916 r_scbond_it 2.848 r_mcangle_it 1.792 r_rigid_bond_restr 1.694 r_mcbond_it 1.509 r_angle_refined_deg 1.504 r_angle_other_deg 1.012 r_mcbond_other 0.695 r_symmetry_hbond_refined 0.449 r_symmetry_vdw_other 0.29 r_nbd_refined 0.252 r_symmetry_vdw_refined 0.221 r_xyhbond_nbd_refined 0.201 r_nbd_other 0.189 r_nbtor_refined 0.188 r_chiral_restr 0.088 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2619 Nucleic Acid Atoms Solvent Atoms 786 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing