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Putative molybdenum cofactor biosynthesis protein from Corynebacterium diphtheriae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 0.1 M Hepes buffer, 3 M NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.13 42.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.822 α = 90 b = 67.822 β = 90 c = 114.276 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97894 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 32.51 91.4 0.073 49.3 29 23460 23460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.53 49.5 0.664 2.23 8.8 773
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.5 32.52 23317 23317 1801 91.03 0.1739 0.1739 0.1707 0.1722 0.2021 0.1717 RANDOM 18.631
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.33 0.65 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.438 r_dihedral_angle_4_deg 24.326 r_dihedral_angle_3_deg 12.447 r_sphericity_free 5.934 r_dihedral_angle_1_deg 5.755 r_scangle_it 5.501 r_scbond_it 4.789 r_rigid_bond_restr 4.334 r_sphericity_bonded 3.544 r_mcangle_it 2.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.438 r_dihedral_angle_4_deg 24.326 r_dihedral_angle_3_deg 12.447 r_sphericity_free 5.934 r_dihedral_angle_1_deg 5.755 r_scangle_it 5.501 r_scbond_it 4.789 r_rigid_bond_restr 4.334 r_sphericity_bonded 3.544 r_mcangle_it 2.166 r_angle_refined_deg 1.535 r_mcbond_it 1.407 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.278 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.118 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1189 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection SCALEPACK data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing