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Crystal structure of SMU.848 from Streptococcus mutans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 0.1M HEPES-NaOH, PH7.5, 0.6%PEG400, 0.2M CaCl2, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.9 35.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.617 α = 90 b = 60.995 β = 90 c = 85.099 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-03-05 M MAD 2 1 x-ray 100 CCD MARRESEARCH 2005-03-10 M SINGLE WAVELENGTH 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9797, 0.9799, 1.0 BSRF 3W1A 2 SYNCHROTRON BSRF BEAMLINE 3W1A 1.0 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.85 50 99.9 0.069 7.7 5.3 21432 21004 1 100
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 99.9 98.4 0.479 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 49.57 21432 21004 2100 99.9 0.213 0.213 0.208 0.2118 0.253 0.2109 RANDOM 22.361
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 0.69 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.309 r_dihedral_angle_3_deg 14.05 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.331 r_dihedral_angle_4_deg 3.324 r_mcangle_it 2.91 r_mcbond_it 2.211 r_scbond_it 2.188 r_angle_refined_deg 1.476 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.309 r_dihedral_angle_3_deg 14.05 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.331 r_dihedral_angle_4_deg 3.324 r_mcangle_it 2.91 r_mcbond_it 2.211 r_scbond_it 2.188 r_angle_refined_deg 1.476 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.242 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1703 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection