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Human HMT1 hnRNP methyltransferase-like 3 (S. cerevisiae) protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 300 20% PEG3350, 0.2 M sodium dihydrogen phosphate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.58 52.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.486 α = 90 b = 107.486 β = 90 c = 68.42 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU 2006-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 76 99.8 31961 31961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 76.03 26214 26214 1389 99.87 0.19756 0.19756 0.19509 0.1936 0.24556 0.2453 RANDOM 39.737
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 1.34 -2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.237 r_dihedral_angle_3_deg 17.662 r_dihedral_angle_4_deg 13.152 r_dihedral_angle_1_deg 6.552 r_scangle_it 3.502 r_scbond_it 2.303 r_angle_refined_deg 1.582 r_mcangle_it 1.375 r_mcbond_it 0.892 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.237 r_dihedral_angle_3_deg 17.662 r_dihedral_angle_4_deg 13.152 r_dihedral_angle_1_deg 6.552 r_scangle_it 3.502 r_scbond_it 2.303 r_angle_refined_deg 1.582 r_mcangle_it 1.375 r_mcbond_it 0.892 r_nbtor_refined 0.306 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.21 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.12 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2455 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing