2FYL
Haddock model of the complex between double module of LRP, CR56, and first domain of receptor associated protein, RAP-d1.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | Exchange 15N,1H-HSQC | 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | 7.0 | ambient | 298 | ||
2 | Exchange 15N,1H,-HSQC | 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
3 | 15N,1H-HSQC | 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | 7.0 | ambient | 298 | ||
4 | 15N,1H-HSQC | 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
5 | HNCA | 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
6 | HNCACB, HN(CO)CACB | 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
HADDOCK modelling from chemical shift perturbation data on both complex partners | Pronto3D |
NMR Ensemble Information | |
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Conformer Selection Criteria | Best averaged HADDOCK score |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 1 |
Representative Model | 5 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | Pronto3D | 20020517 | Kjaer et al |
2 | structure solution | HADDOCK | Bonvin et al | |
3 | refinement | HADDOCK | Bonvin et al |