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Crystal structure of DHC purified from Rhodobacter sphaeroides
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 20% PEG 3000, 0.2M ammonium acetate, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.91 57.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.79 α = 90 b = 72.79 β = 90 c = 51.484 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-09-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9, 1.74 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 95.2 0.068 11.4 4.2 13408 13408
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 94.3 0.342 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 20 12739 12739 659 100 0.1519 0.1519 0.14987 0.1598 0.19272 0.2079 RANDOM 19.946
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.38 0.77 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.245 r_dihedral_angle_4_deg 23.026 r_dihedral_angle_3_deg 13.528 r_sphericity_free 6.475 r_dihedral_angle_1_deg 5.107 r_scangle_it 3.344 r_scbond_it 2.56 r_mcangle_it 1.998 r_sphericity_bonded 1.776 r_rigid_bond_restr 1.766
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.245 r_dihedral_angle_4_deg 23.026 r_dihedral_angle_3_deg 13.528 r_sphericity_free 6.475 r_dihedral_angle_1_deg 5.107 r_scangle_it 3.344 r_scbond_it 2.56 r_mcangle_it 1.998 r_sphericity_bonded 1.776 r_rigid_bond_restr 1.766 r_angle_refined_deg 1.594 r_mcbond_it 1.555 r_angle_other_deg 0.958 r_mcbond_other 0.437 r_nbd_refined 0.319 r_symmetry_vdw_other 0.318 r_symmetry_hbond_refined 0.208 r_nbd_other 0.187 r_nbtor_refined 0.176 r_chiral_restr 0.12 r_xyhbond_nbd_refined 0.117 r_nbtor_other 0.092 r_symmetry_vdw_refined 0.065 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 823 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing