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Structure of transhydrogenase (dI.D135N.NAD+)2(dIII.E155W.NADP+)1 asymmetric complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HZZ pdb entry 1HZZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 16-20% 8K-PEG, 20-150 mM (NH4)2SO4,100 mM Mes pH 6.0 and 10% glycerol in the presence of 50 mM NAD+ and 5 mM NADP+, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.7 54.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.912 α = 90 b = 73.871 β = 90 c = 205.172 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.934 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 31.4 100 0.0666 5.7 4.5 50105 50105 2 43.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.34 4.5 7207
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1HZZ 2.3 31.37 47563 2542 99.99 0.2039 0.20165 0.2056 0.24808 0.2521 from pdb entry 1NM5 45.366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 3.32 -2.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.26 r_dihedral_angle_3_deg 13.748 r_dihedral_angle_4_deg 10.835 r_dihedral_angle_1_deg 5.251 r_mcangle_it 1.372 r_mcbond_it 1.224 r_angle_refined_deg 1.184 r_scangle_it 1.142 r_angle_other_deg 1.084 r_scbond_it 0.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.26 r_dihedral_angle_3_deg 13.748 r_dihedral_angle_4_deg 10.835 r_dihedral_angle_1_deg 5.251 r_mcangle_it 1.372 r_mcbond_it 1.224 r_angle_refined_deg 1.184 r_scangle_it 1.142 r_angle_other_deg 1.084 r_scbond_it 0.743 r_symmetry_hbond_refined 0.211 r_nbd_other 0.162 r_nbd_refined 0.161 r_nbtor_refined 0.154 r_xyhbond_nbd_refined 0.151 r_mcbond_other 0.147 r_symmetry_vdw_other 0.129 r_symmetry_vdw_refined 0.126 r_nbtor_other 0.082 r_chiral_restr 0.056 r_bond_refined_d 0.007 r_bond_other_d 0.002 r_gen_planes_refined 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6669 Nucleic Acid Atoms Solvent Atoms 382 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling