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Thermotoga maritima maltotriose binding protein bound with maltotriose.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MBP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 0.2M Na Acetate, 0.1M Na Cacodylate pH 6.5, 30% w/v PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.13 42.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.836 α = 90 b = 56.183 β = 94.67 c = 88.794 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2004-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 50 98.7 0.073 2.5 43576 43576
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.69 99.8 0.53 1.8 2.4 4382
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3MBP 1.7 50 38268 38268 1913 98.55 0.195 0.195 0.194 0.2014 0.23 0.2355 RANDOM 23.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.58 -0.76 1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.876 r_dihedral_angle_4_deg 21.839 r_dihedral_angle_3_deg 14.055 r_dihedral_angle_1_deg 5.515 r_scangle_it 2.921 r_scbond_it 2.122 r_angle_refined_deg 1.321 r_mcangle_it 1.211 r_mcbond_it 1.078 r_angle_other_deg 0.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.876 r_dihedral_angle_4_deg 21.839 r_dihedral_angle_3_deg 14.055 r_dihedral_angle_1_deg 5.515 r_scangle_it 2.921 r_scbond_it 2.122 r_angle_refined_deg 1.321 r_mcangle_it 1.211 r_mcbond_it 1.078 r_angle_other_deg 0.816 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.21 r_symmetry_vdw_other 0.203 r_mcbond_other 0.197 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.17 r_nbd_other 0.168 r_xyhbond_nbd_refined 0.143 r_nbtor_other 0.084 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2926 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction AMoRE phasing