X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherMap obtained from peak wavelength used for orientation corresponding to the present dataset.

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62985% PEG350, 0.1M Na Citrate (pH 4.6) and 5% MPD., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7354.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.547α = 90
b = 132.139β = 105.1
c = 107.85γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-09-05MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 42005-10-02MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8C0.9801NSLSX8C
2SYNCHROTRONNSLS BEAMLINE X29A1.1NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.04104.25787.50.0739.23.612821111937831.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.042.1133.80.4051.95533

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTMap obtained from peak wavelength used for orientation corresponding to the present dataset.2.250128211121721649097.960.20470.204770.202480.2471RANDOM35.081
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.83-1.261.39-1.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.344
r_dihedral_angle_3_deg17.159
r_dihedral_angle_4_deg16.56
r_dihedral_angle_1_deg5.562
r_scangle_it3.493
r_scbond_it2.185
r_mcangle_it1.381
r_angle_refined_deg1.278
r_mcbond_it0.884
r_nbtor_refined0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.344
r_dihedral_angle_3_deg17.159
r_dihedral_angle_4_deg16.56
r_dihedral_angle_1_deg5.562
r_scangle_it3.493
r_scbond_it2.185
r_mcangle_it1.381
r_angle_refined_deg1.278
r_mcbond_it0.884
r_nbtor_refined0.301
r_nbd_refined0.204
r_symmetry_vdw_refined0.143
r_xyhbond_nbd_refined0.135
r_chiral_restr0.093
r_symmetry_hbond_refined0.087
r_bond_refined_d0.013
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15835
Nucleic Acid Atoms
Solvent Atoms630
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SnBphasing
MOLREPphasing