Solution NMR Structure of Protein Ne2328 from Nitrosomonas europaea. Northeast Structural Genomics Consortium Target NeT3.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | GFT (4,3)D HNNCABCA | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 2 | GFT (4,3)D CABCA(CO)NHN | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 3 | GFT (4,3)D HABCAB(CO)NHN | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 4 | GFT (4,3)D HCCH | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 5 | Simultaneous 13C-, 15N-resolved [1H, 1H] NOESY | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 6 | Aromatic 13C-resolved [1H, 1H] NOESY | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, torsion angle dynamics, explicit water bath refinement | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | B-FACTOR COLUMN STORES ADDITIONAL COORDINATE DIGITS. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.3 | Delaglio |
| 2 | collection | VNMR | 6.1C | Varian Inc. |
| 3 | data analysis | CARA | 1.5 | Keller |
| 4 | structure solution | CYANA | 2.1 | Guentert |
| 5 | refinement | CNS | 1.1 | |














