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The crystal structure of a transcriptional regulator from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 298 PEG2KMME 30%, NaCitr. 0.1M, NaAcetate 0.2M, Tacsimate 1%, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.83 56.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.411 α = 90 b = 71.411 β = 90 c = 147.717 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 61.9 98.84 0.096 27.1 12.4 24053 23774 2 2 22.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 82.4 0.556 1.58 4.2 4627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 61.9 24053 23774 1281 98.84 0.22 0.21265 0.21109 0.2145 0.24166 0.212 RANDOM 22.219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.147 r_dihedral_angle_4_deg 14.214 r_dihedral_angle_3_deg 13.862 r_dihedral_angle_1_deg 4.278 r_scangle_it 4.195 r_scbond_it 2.677 r_mcangle_it 1.362 r_angle_refined_deg 1.171 r_mcbond_it 0.829 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.147 r_dihedral_angle_4_deg 14.214 r_dihedral_angle_3_deg 13.862 r_dihedral_angle_1_deg 4.278 r_scangle_it 4.195 r_scbond_it 2.677 r_mcangle_it 1.362 r_angle_refined_deg 1.171 r_mcbond_it 0.829 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.161 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1345 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling