X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52983.15 M Na formate, 90 mM HEPES, 3% (v/v) DMSO, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0259.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.015α = 90
b = 103.449β = 90
c = 191.217γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26C1.100NSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3495091.437116
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.3492.4376.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.3492035176185991.080.22860.22860.220250.27143RANDOM64.097
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.864.47-1.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.919
r_dihedral_angle_4_deg21.192
r_dihedral_angle_3_deg19.604
r_dihedral_angle_1_deg6.863
r_scangle_it3.059
r_angle_refined_deg2.434
r_scbond_it2.081
r_mcangle_it1.166
r_mcbond_it0.718
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.919
r_dihedral_angle_4_deg21.192
r_dihedral_angle_3_deg19.604
r_dihedral_angle_1_deg6.863
r_scangle_it3.059
r_angle_refined_deg2.434
r_scbond_it2.081
r_mcangle_it1.166
r_mcbond_it0.718
r_nbtor_refined0.309
r_nbd_refined0.245
r_symmetry_vdw_refined0.243
r_xyhbond_nbd_refined0.189
r_chiral_restr0.188
r_metal_ion_refined0.155
r_symmetry_hbond_refined0.135
r_bond_refined_d0.023
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5273
Nucleic Acid Atoms
Solvent Atoms127
Heterogen Atoms118

Software

Software
Software NamePurpose
CBASSdata collection
SCALEPACKdata scaling
FFTmodel building
REFMACrefinement
FFTphasing