2F9I | pdb_00002f9i

Crystal Structure of the carboxyltransferase subunit of ACC from Staphylococcus aureus

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1ON3	PDB ENTRY 1ON3

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8	300	30% PEG-400, 0.1M HEPES, pH 8.0, 0.2M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 300K

Crystal Properties
Matthews coefficient	Solvent content
2.43	49.34

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 190.979	α = 90
b = 50.859	β = 113.51
c = 149.639	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100				2003-05-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 17-ID		APS	17-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.98	50	97.3	0.06		3		90018	1	1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.98	2.05	82.3		0.293		2.7	7562

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1ON3	1.98	50	90017	9030	97.57	0.189	0.189	0.186	0.19	0.213	0.21	RANDOM	37.884

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.848
r_dihedral_angle_4_deg	14.619
r_dihedral_angle_3_deg	12.653
r_dihedral_angle_1_deg	4.884
r_scangle_it	3.835
r_scbond_it	2.595
r_angle_refined_deg	1.606
r_mcangle_it	1.562
r_mcbond_it	1.332
r_symmetry_vdw_refined	0.378

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.848
r_dihedral_angle_4_deg	14.619
r_dihedral_angle_3_deg	12.653
r_dihedral_angle_1_deg	4.884
r_scangle_it	3.835
r_scbond_it	2.595
r_angle_refined_deg	1.606
r_mcangle_it	1.562
r_mcbond_it	1.332
r_symmetry_vdw_refined	0.378
r_nbtor_refined	0.308
r_nbd_refined	0.233
r_symmetry_hbond_refined	0.158
r_xyhbond_nbd_refined	0.141
r_chiral_restr	0.103
r_bond_refined_d	0.021
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8685
Nucleic Acid Atoms
Solvent Atoms	583
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
SCALEPACK	data scaling
CNS	refinement
DM	phasing
DENZO	data reduction
PDB_EXTRACT	data extraction
MAR345	data collection
CNS	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.