2F9I

Crystal Structure of the carboxyltransferase subunit of ACC from Staphylococcus aureus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP830030% PEG-400, 0.1M HEPES, pH 8.0, 0.2M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.4349.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 190.979α = 90
b = 50.859β = 113.51
c = 149.639γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002003-05-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.985097.30.0639001811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.982.0582.30.2932.77562

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ON31.985090017903097.570.1890.1890.1860.213RANDOM37.884
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.848
r_dihedral_angle_4_deg14.619
r_dihedral_angle_3_deg12.653
r_dihedral_angle_1_deg4.884
r_scangle_it3.835
r_scbond_it2.595
r_angle_refined_deg1.606
r_mcangle_it1.562
r_mcbond_it1.332
r_symmetry_vdw_refined0.378
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.848
r_dihedral_angle_4_deg14.619
r_dihedral_angle_3_deg12.653
r_dihedral_angle_1_deg4.884
r_scangle_it3.835
r_scbond_it2.595
r_angle_refined_deg1.606
r_mcangle_it1.562
r_mcbond_it1.332
r_symmetry_vdw_refined0.378
r_nbtor_refined0.308
r_nbd_refined0.233
r_symmetry_hbond_refined0.158
r_xyhbond_nbd_refined0.141
r_chiral_restr0.103
r_bond_refined_d0.021
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8685
Nucleic Acid Atoms
Solvent Atoms583
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
DMphasing
DENZOdata reduction
PDB_EXTRACTdata extraction
MAR345data collection
CNSphasing