2F7B | pdb_00002f7b

CatM effector binding domain

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2F6G	PDB Entry 2F6G

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	microbatch under oil		288	PEG 4000, ammonium sulfate, sodium acetate, NaCl, tris, glycerol, imidazole, microbatch under oil, temperature 288K

Crystal Properties
Matthews coefficient	Solvent content
2.6	52.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 66.184	α = 90
b = 75.529	β = 90
c = 102.189	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH				SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-BM	1.00727	APS	19-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	60.746	93.9	0.056	29.7	10.3	22581	22581			20.47029

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.86	88.7	88.7	0.73	7.5		2107

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB Entry 2F6G	1.9	60.746	18410	18410	1007	94.441	0.175	0.175	0.1718	0.18	0.2399	0.24	Random	19.847

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.296			0.682		-0.978

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.543
r_dihedral_angle_other_3_deg	16.097
r_dihedral_angle_3_deg	12.191
r_dihedral_angle_4_deg	11.931
r_dihedral_angle_1_deg	5.391
r_scangle_it	3.161
r_scbond_it	2.362
r_scangle_other	1.312
r_mcangle_it	1.17
r_angle_refined_deg	1.08
r_mcbond_it	0.778
r_scbond_other	0.74
r_angle_other_deg	0.727
r_mcangle_other	0.499
r_symmetry_vdw_other	0.215
r_nbd_refined	0.183
r_nbtor_refined	0.168
r_nbd_other	0.157
r_symmetry_vdw_refined	0.149
r_xyhbond_nbd_refined	0.124
r_mcbond_other	0.081
r_symmetry_hbond_refined	0.078
r_nbtor_other	0.077
r_chiral_restr	0.059
r_bond_refined_d	0.007
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1688
Nucleic Acid Atoms
Solvent Atoms	359
Heterogen Atoms	21

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing