2F71

Protein tyrosine phosphatase 1B with sulfamic acid inhibitors


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION829818% PEG4000, 200 mM MgCl2, 100 mM TRIS-HCl, pH 8.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.463.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.189α = 90
b = 88.189β = 90
c = 105.115γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-07-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.00APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.553698.50.0318.244.4680106801020.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6593.70.452.223.310913

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1PTV1.55366800668006342698.610.1530.1530.1520.172RANDOM18.776
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.080.17-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.256
r_dihedral_angle_4_deg22.839
r_dihedral_angle_3_deg13.528
r_dihedral_angle_1_deg6.291
r_scangle_it4.515
r_scbond_it3.295
r_angle_other_deg2.639
r_angle_refined_deg1.955
r_mcangle_it1.833
r_mcbond_it1.686
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.256
r_dihedral_angle_4_deg22.839
r_dihedral_angle_3_deg13.528
r_dihedral_angle_1_deg6.291
r_scangle_it4.515
r_scbond_it3.295
r_angle_other_deg2.639
r_angle_refined_deg1.955
r_mcangle_it1.833
r_mcbond_it1.686
r_mcbond_other0.349
r_symmetry_vdw_other0.243
r_nbd_refined0.239
r_symmetry_vdw_refined0.222
r_xyhbond_nbd_refined0.21
r_nbd_other0.203
r_nbtor_refined0.185
r_symmetry_hbond_refined0.156
r_chiral_restr0.113
r_nbtor_other0.098
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_gen_planes_other0.005
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2427
Nucleic Acid Atoms
Solvent Atoms348
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing