☰ Navigation Tabs
Crystal structure of Bifunctional coenzyme A synthase (CoA synthase): (18044849) from MUS MUSCULUS at 1.70 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other 1n3bA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5.1 277 15.0% iso-Propanol, 20.0% PEG-4000, 0.1M Na,K-Phosphate , pH 5.1, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.54 51.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.04 α = 90 b = 32.37 β = 110.24 c = 95.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.00 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.03 93.2 0.053 12.69 2.55 32283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.6 80.6 0.661 1.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 1n3bA 1.7 28.03 30645 1637 99.77 0.18 0.17984 0.178 0.188 0.211 0.2207 RANDOM 30.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -1.15 1.39 -1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.493 r_dihedral_angle_3_deg 14.581 r_dihedral_angle_4_deg 13.847 r_scangle_it 7.518 r_dihedral_angle_1_deg 5.757 r_scbond_it 5.497 r_mcangle_it 3.466 r_mcbond_it 2.685 r_angle_refined_deg 1.724 r_angle_other_deg 0.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.493 r_dihedral_angle_3_deg 14.581 r_dihedral_angle_4_deg 13.847 r_scangle_it 7.518 r_dihedral_angle_1_deg 5.757 r_scbond_it 5.497 r_mcangle_it 3.466 r_mcbond_it 2.685 r_angle_refined_deg 1.724 r_angle_other_deg 0.858 r_mcbond_other 0.654 r_symmetry_hbond_refined 0.267 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.18 r_nbd_other 0.175 r_nbtor_refined 0.175 r_symmetry_vdw_other 0.174 r_chiral_restr 0.12 r_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1767 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing