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The crystal structure of human peroxisomal delta3, delta2 enoyl CoA isomerase (PECI)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 20 % isopropanol, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.97 37.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.931 α = 90 b = 123.196 β = 90 c = 128.133 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979097 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.2 3.6 54609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 50 51615 51615 2769 98.84 0.21516 0.21516 0.21293 0.2147 0.25728 0.257 RANDOM 33.902
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 -0.19 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.566 r_dihedral_angle_4_deg 22.162 r_dihedral_angle_3_deg 15.201 r_dihedral_angle_1_deg 5.868 r_scangle_it 3.193 r_scbond_it 2.181 r_angle_refined_deg 1.316 r_mcangle_it 1.176 r_mcbond_it 1.07 r_angle_other_deg 0.888
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.566 r_dihedral_angle_4_deg 22.162 r_dihedral_angle_3_deg 15.201 r_dihedral_angle_1_deg 5.868 r_scangle_it 3.193 r_scbond_it 2.181 r_angle_refined_deg 1.316 r_mcangle_it 1.176 r_mcbond_it 1.07 r_angle_other_deg 0.888 r_symmetry_vdw_other 0.301 r_symmetry_hbond_refined 0.274 r_xyhbond_nbd_refined 0.25 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.205 r_mcbond_other 0.203 r_nbd_other 0.183 r_nbtor_refined 0.179 r_nbtor_other 0.087 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5572 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing