2F52
Solution structure of cold shock protein CspB from Bacillus subtilis in complex with heptathymidine
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.8mM CspB U-15N, 50mM Na-cacodylate, 3mM MgCl2, 1.2mM heptathymidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 53mM buffer salt | 7.0 | ambient | 288 | |
2 | 3D_15N-separated_NOESY | 0.8mM CspB U-15N, 50mM Na-cacodylate, 3mM MgCl2, 1.2mM heptathymidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 53mM buffer salt | 7.0 | ambient | 288 | |
3 | 3D_13C-separated_NOESY | 0.8mM CspB U-15N, 13C, 50mM Na-cacodylate, 3mM MgCl2, 1.2mM heptathymidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 53mM buffer salt | 7.0 | ambient | 288 | |
4 | HNHA | 0.8mM CspB U-15N, 13C, 50mM Na-cacodylate, 3mM MgCl2, 1.2mM heptathymidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 53mM buffer salt | 7.0 | ambient | 288 | |
5 | RDC with IPAP | 0.8mM CspB U-15N, 50mM Na-cacodylate, 3mM MgCl2, 1.2mM heptathymidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 53mM buffer salt | 7.0 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | DMX | 750 |
3 | Bruker | AVANCE | 600 |
4 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 120 |
Conformers Submitted Total Number | 18 |
Representative Model | 1 (smalest pair-wise rmsd) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | Felix | 2.3 | MSI |
2 | structure solution | X-PLOR | 1.2.1 | NIH |
3 | refinement | X-PLOR | 1.2.1 | NIH |