2F40
Structure of a Novel Protein from Backbone-Centered NMR Data and NMR-Assisted Structure Prediction
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 15N IPAP HSQC | 2mM PF1455 U-15N, 20mM Tris, 70mM NaCl, pH 7.0 | 90% H20, 10% D20 | 70mM NaCl | 7.0 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 2mM PF1455 U-15N, 20mM Tris, 70mM NaCl, pH 7.0 | 90% H20, 10% D20 | 70mM NaCl | 7.0 | ambient | 298 | |
3 | HNCA-ECOSY | 2mM PF1455 U-15N, 20mM Tris, 70mM NaCl, pH 7.0 | 90% H20, 10% D20 | 70mM NaCl | 7.0 | ambient | 298 | |
4 | HNCAHA | 2mM PF1455 U-15N, 20mM Tris, 70mM NaCl, pH 7.0 | 90% H20, 10% D20 | 70mM NaCl | 7.0 | ambient | 298 | |
5 | 3D TOCSY | 2mM PF1455 U-15N, 20mM Tris, 70mM NaCl, pH 7.0 | 90% H20, 10% D20 | 70mM NaCl | 7.0 | ambient | 298 | |
6 | 15N IPAP HSQC | 1.14mM PF1455 U-15N/16%13C, 11mM Tris, 40mM NaCl, 10mg/ml Phage | Phage in 90% H2O, 10% D2O | 40mM NaCl | 7.0 | ambient | 298 | |
7 | HNCA-ECOSY | 1.14mM PF1455 U-15N/16%13C, 11mM Tris, 40mM NaCl, 10mg/ml Phage | Phage in 90% H2O, 10% D2O | 40mM NaCl | 7.0 | ambient | 298 | |
8 | 15N IPAP HSQC | 1.2mM PF1455 U-15N/16%13C, 20mM Tris, 70mM NaCl, 3% C12E5/hexanol, pH 7.0 | C12E5 in 90% H2O, 10% D2O | 70mM NaCl | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
RDC directed fragment assembly | limited amounts of structural data are used to improve an initial homology search and the data are subsequently used to produce a structure by data-constrained refinement of an identified structural template | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | NMRPipe | F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax | |
2 | refinement | XPLOR-NIH | 2.9.1 | |
3 | data analysis | REDCAT | 1.0 | Valafar, H. & Prestegard J.H. |