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CRYSTAL STRUCTURE OF A PUTATIVE 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM (PA3744) FROM PSEUDOMONAS AERUGINOSA AT 2.46 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 293 30.0% Glycerol, 5.6% PEG-4000, 0.1M Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.41 63.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.228 α = 90 b = 80.228 β = 90 c = 71.855 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-07-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97932, 0.91162, 0.97915 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 26.76 98.9 0.079 0.079 6 5.4 9930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.52 88.4 0.752 0.752 1 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.46 26.8 9433 476 98.71 0.17732 0.175 0.1831 0.237 0.2381 RANDOM 35.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.06 1.53 3.06 -4.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.487 r_dihedral_angle_4_deg 21.484 r_dihedral_angle_3_deg 15.184 r_scangle_it 7.835 r_dihedral_angle_1_deg 6.838 r_scbond_it 6.2 r_mcangle_it 2.964 r_mcbond_it 2.4 r_angle_refined_deg 1.702 r_angle_other_deg 0.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.487 r_dihedral_angle_4_deg 21.484 r_dihedral_angle_3_deg 15.184 r_scangle_it 7.835 r_dihedral_angle_1_deg 6.838 r_scbond_it 6.2 r_mcangle_it 2.964 r_mcbond_it 2.4 r_angle_refined_deg 1.702 r_angle_other_deg 0.816 r_mcbond_other 0.501 r_symmetry_vdw_other 0.21 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.202 r_nbd_other 0.192 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.174 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.09 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1283 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing