☰ Navigation Tabs
Crystal Structure of Monomeric Uncomplexed form of Xenopus dishevelled PDZ domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 297 1.4 M ammonium sulfate
0.1 M sodium cacodylate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.18 43.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.834 α = 90 b = 89.834 β = 90 c = 82.471 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-08-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9798, 0.9801, 0.9611 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.45 100 34969 34969
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 19.45 34969 33216 1753 99.96 0.21571 0.21371 0.2146 0.25263 0.2158 RANDOM 27.656
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.311 r_dihedral_angle_3_deg 13.19 r_scangle_it 11.203 r_dihedral_angle_4_deg 9.697 r_scbond_it 9.111 r_dihedral_angle_1_deg 6.624 r_mcangle_it 4.607 r_mcbond_it 3.959 r_angle_refined_deg 1.696 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.311 r_dihedral_angle_3_deg 13.19 r_scangle_it 11.203 r_dihedral_angle_4_deg 9.697 r_scbond_it 9.111 r_dihedral_angle_1_deg 6.624 r_mcangle_it 4.607 r_mcbond_it 3.959 r_angle_refined_deg 1.696 r_nbtor_refined 0.307 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.236 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2550 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement Adxv data processing HKL-2000 data scaling SOLVE phasing