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Solution Structure of the gene product of E. coli gene ydhA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 0.5 mM ydha U-15N,U-13C, 10mM sodium phosphate, 400 mM NaCl, 10 mM dithiothreitol, 0.01% sodium azide, 1mM benzamidine, pH6.5, 90% H2O, 10% D2O 90% H2O/10% D2O 410 mM 6.5 ambient 298.0 2 3D_15N-separated_NOESY 0.5 mM ydha U-15N,U-13C, 10mM sodium phosphate, 400 mM NaCl, 10 mM dithiothreitol, 0.01% sodium azide, 1mM benzamidine, pH6.5, 90% H2O, 10% D2O 90% H2O/10% D2O 410 mM 6.5 ambient 298.0
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics, molecular dynamics VNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was determined using triple-resonance NMR spectroscopy
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 6.1B Varian Inc. 2 processing NMRPipe 2.3 Frank Delaglio Stephan Grzesiek, Guang Zhu, Geerten W. Vuister, John Pfeifer, and Ad Bax 3 data analysis NMRView 5.2.2 B.A. Johnson 4 refinement CYANA 2.032.3 Guntert, P., Mumenthaler, C. and Wuthrich, K. 5 refinement CNS 1.1 A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros,R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges,N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren