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Canavalia gladiata lectin complexed with Man1-3Man-OMe
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WUV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 Sodium Formate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.19 43.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.391 α = 90 b = 69.391 β = 90 c = 161.298 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.43 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 40.29 0.04 0.04 10.7 2.5 48437
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 0.452 0.452 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WUV 2.1 33.92 47581 2524 98.89 0.19224 0.18935 0.187 0.24526 0.24 RANDOM 22.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.567 r_dihedral_angle_4_deg 20.349 r_dihedral_angle_3_deg 18.363 r_dihedral_angle_1_deg 14.391 r_scangle_it 4.1 r_scbond_it 2.869 r_angle_refined_deg 2.267 r_mcangle_it 1.951 r_mcbond_it 1.186 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.567 r_dihedral_angle_4_deg 20.349 r_dihedral_angle_3_deg 18.363 r_dihedral_angle_1_deg 14.391 r_scangle_it 4.1 r_scbond_it 2.869 r_angle_refined_deg 2.267 r_mcangle_it 1.951 r_mcbond_it 1.186 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.248 r_nbd_refined 0.239 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.179 r_metal_ion_refined 0.141 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7122 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement MARCCD data collection MOSFLM data reduction SCALA data scaling MOLREP phasing