2EE5

Solution structure of the N-teruminus extended RhoGAP domain from human Rho GTPase activating protein 5 variant


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1.31mM RhoGAP domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O90% H2O/10% D2O120mM7.0ambient296
23D_15N-separated_NOESY1.31mM RhoGAP domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O90% H2O/10% D2O120mM7.0ambient296
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerAVANCE II900
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, restrainted molecular dynamicsXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations, structures with the lowest energy, target function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.5Bruker
2collectionTopSpin1.3Bruker
3processingNMRPipe20060524Delaglio, F.
4data analysisNMRView5.0.4Johnson, B.A.
5data analysisKUJIRA0.9823Kobayashi, N.
6structure solutionCYANA2.0.17Guntert, P.
7refinementCYANA2.0.17Guntert, P.