X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82781.0M ammonium sulfate, 0.1M TRIS-HCL, 0.01M MGCL2, pH 8.00, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
3.7367.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.602α = 90
b = 199.743β = 90
c = 119.64γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 42005-06-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125072223

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1JFZ25068021362799.70.2120.2110.234RANDOM40.46
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-2.032.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.361
r_scangle_it4.971
r_angle_other_deg3.576
r_scbond_it3.026
r_mcangle_it2.731
r_mcbond_it1.796
r_angle_refined_deg1.483
r_symmetry_vdw_other0.291
r_nbd_other0.278
r_nbd_refined0.239
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.361
r_scangle_it4.971
r_angle_other_deg3.576
r_scbond_it3.026
r_mcangle_it2.731
r_mcbond_it1.796
r_angle_refined_deg1.483
r_symmetry_vdw_other0.291
r_nbd_other0.278
r_nbd_refined0.239
r_symmetry_vdw_refined0.188
r_symmetry_hbond_refined0.179
r_xyhbond_nbd_refined0.176
r_metal_ion_refined0.158
r_chiral_restr0.102
r_nbtor_other0.102
r_bond_refined_d0.02
r_gen_planes_other0.01
r_gen_planes_refined0.008
r_bond_other_d
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4206
Nucleic Acid Atoms
Solvent Atoms192
Heterogen Atoms6

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling