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Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5F-UTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE PDB entry 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 33% PEG 4000, 0.2M ammonium acetate, 0.1M sodium citrate, 4% butyrolactone, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.597 α = 90 b = 95.597 β = 90 c = 201.155 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 4 2006-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 0.9 0.74 1.8 33329 31778 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1WNE 2.6 20 2 33329 31778 1691 99.99 0.23616 0.23343 0.2293 0.28931 0.2826 RANDOM 40.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.07 0.13 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.19 r_dihedral_angle_4_deg 19.012 r_dihedral_angle_3_deg 18.918 r_dihedral_angle_1_deg 6.066 r_scangle_it 1.888 r_angle_refined_deg 1.554 r_scbond_it 1.19 r_mcangle_it 0.668 r_mcbond_it 0.394 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.19 r_dihedral_angle_4_deg 19.012 r_dihedral_angle_3_deg 18.918 r_dihedral_angle_1_deg 6.066 r_scangle_it 1.888 r_angle_refined_deg 1.554 r_scbond_it 1.19 r_mcangle_it 0.668 r_mcbond_it 0.394 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.295 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.233 r_xyhbond_nbd_refined 0.219 r_chiral_restr 0.091 r_metal_ion_refined 0.054 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7482 Nucleic Acid Atoms 636 Solvent Atoms 65 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement ProDC data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing