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Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 40% (v/v) PEG 300, 0.1M Cacodylate buffer pH6.5, 0.2M Calcium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.563 α = 90 b = 69.563 β = 90 c = 142.606 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2004-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 0.073 23.3 13.6 19648 19648 -3 -3 21.426
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 100 0.458 6.6 12.8 1905
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 18565 999 100 0.20668 0.20536 0.2061 0.23305 0.232 RANDOM 23.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.26 0.51 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.486 r_dihedral_angle_4_deg 26.182 r_dihedral_angle_3_deg 16.069 r_dihedral_angle_1_deg 5.462 r_scangle_it 4.11 r_scbond_it 2.676 r_mcangle_it 1.651 r_angle_refined_deg 1.622 r_mcbond_it 0.952 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.486 r_dihedral_angle_4_deg 26.182 r_dihedral_angle_3_deg 16.069 r_dihedral_angle_1_deg 5.462 r_scangle_it 4.11 r_scbond_it 2.676 r_mcangle_it 1.651 r_angle_refined_deg 1.622 r_mcbond_it 0.952 r_nbtor_refined 0.311 r_metal_ion_refined 0.289 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.202 r_chiral_restr 0.152 r_xyhbond_nbd_refined 0.13 r_symmetry_hbond_refined 0.114 r_bond_refined_d 0.013 r_symmetry_metal_ion_refined 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1155 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling SHELXE model building