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Mutant Human Ribonuclease 1 (T24L, Q28L, R31L, R32L)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7RSA PDB ENTRY 7RSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 293 30% PEG 400, 0.1M cadmium chloride, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.52 65.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.51 α = 90 b = 93.51 β = 90 c = 94.386 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.085 34.6 14.2 44558
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.446 6.3 13.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 7RSA 1.7 20 42256 2242 99.93 0.19527 0.1943 0.1926 0.21364 0.2131 RANDOM 37.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 -0.84 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.416 r_dihedral_angle_3_deg 13.63 r_dihedral_angle_4_deg 9.051 r_dihedral_angle_1_deg 6.096 r_scangle_it 3.151 r_scbond_it 2.086 r_angle_refined_deg 1.548 r_mcangle_it 1.322 r_mcbond_it 0.833 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.416 r_dihedral_angle_3_deg 13.63 r_dihedral_angle_4_deg 9.051 r_dihedral_angle_1_deg 6.096 r_scangle_it 3.151 r_scbond_it 2.086 r_angle_refined_deg 1.548 r_mcangle_it 1.322 r_mcbond_it 0.833 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.218 r_symmetry_metal_ion_refined 0.212 r_symmetry_hbond_refined 0.2 r_metal_ion_refined 0.191 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2014 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing